These simple Gluten-Free Blackberry Muffins are pleasantly sweet, pillowy, light and fluffy, with bursts of tart juicy blackberries in every bite. These fruity muffins are perfect for meal-prep breakfasts or any time you want a special yet easy start to your day.

If you are looking for an easy recipe for gluten-free muffins, you've come to the right place. There is no reason to feel intimidated by making muffins, even gluten-free muffins, because they come together in about 10 minutes and require very minimal equipment and special ingredients.
This recipe is inspired by my desire to offer more gluten-free recipes to my readers. Lately I've been experimenting with different diets to help with gut health, and one of the most common foods to eliminate is wheat and gluten. So while I love my other muffin recipes, like Banana Chocolate Chunk Muffins or hearty Banana and Carrot Muffins, they were not developed to be gluten-free. These delicious blackberry muffins, on the other hand, are intended to be completely gluten-free.
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Ingredients that Matter
Aside from the gluten-free flour substitute, these muffins use standard ingredients you should be able to find in most grocery stores. Here are the ingredients you'll need to make this recipe:

- Gluten-Free Flour. There are several great gluten-free flour substitutes. Look for a one-to-one flour substitute (preferably with xanthan gum), like Bob's Red Mill Gluten Free 1-to-1 Baking Flour. If you've never worked with a flour substitute, note that it performs very similar to regular all-purpose wheat flour, but the end product will be a little gritter than traditional flour.
- Blackberries. Fresh, ripe blackberries are best, of course, but you can also use frozen berries. Just be sure to thaw them first, and drain off any excess liquid or the muffins will get soggy.
- Sugar. While blackberries provide a bit of sweetness, these muffins really need granulated sugar to taste sweet enough.
- Yogurt. Use plain yogurt, full-fat or low-fat. I typically use a Greek-strained yogurt, but regular yogurt will work fine as well. Choose a plant-based yogurt (or applesauce) to make these blackberry muffins dairy-free.
- Milk. Whole milk is my go-to dairy for these muffins, but like the yogurt you can use a low-fat milk or even plant-based substitute if you want to make dairy-free muffins.
- Eggs. A pair of large eggs help bind the wet and dry ingredients into a cohesive batter.
- Vanilla. A splash of vanilla extract gives these muffins a pleasant, familiar flavor.
- Oil or Melted Butter. Use a light olive oil, melted coconut oil, vegetable oil or another mild old. You can also use melted unsalted butter.
- Baking Powder & Baking Soda. A bit of baking powder gives these muffins a light and airy texture. This ingredient is critical as gluten-free flour tends to have a denser texture compared to regular wheat flour. Baking soda adds to the browning and provides a bit more lift.
- Table Salt. Don't skip the salt or these muffins will taste incredibly bland.
See recipe card for quantities.
How to make gluten-free blackberry muffins
This blackberry muffin recipe is super simple! Follow the steps below to make the batter in about 10 minutes. Then bake them for about 20 minutes and you'll have freshly baked breakfast muffins. Here's how to make this recipe:

- Preheat oven to 350F and place an oven rack in the middle position. Whisk together the gluten-free flour, sugar, baking powder, baking soda and table salt in a large mixing bowl until well combined.

- Add the yogurt, eggs, oil (or butter), milk and vanilla to a medium mixing bowl.

- Whisk the wet ingredients until smooth. Note: the mixture may look curdled, but keep whisking and it will become smooth in no time.

- Make a small well in the center of the dry ingredients and pour in the wet ingredients.

- Switch to a flexible spatula and gently fold the mixture into a cohesive batter.

- Sprinkle the blackberries with 1 tablespoon of gluten-free flour and toss to coat. This will help the juices from pouring out into the batter. Gently fold the berries in the batter until well combined.

- Line a muffin pan with parchment liners and spoon in about ⅓ cup of the batter into each paper-lined cup. The cups will be just about full. Level the batter out a bit using a damp finger. Sprinkle a big pinch of sugar on each muffin.

- Bake in preheated oven until the muffins are completely set and a toothpick inserted into the center comes out clean, 22 to 25 minutes. Cool on a wire rack for 5 minutes then remove each muffin and continue cooling on the rack at least another 10 minutes.
Hint: Be sure to whisk the baking powder and baking soda well into the flour. If these ingredients are not well combined, you may get pockets of metallic flavor in your muffins.
Substitutions
These gluten-free muffins are quite simple to adjust based on your dietary restrictions or preferences. Consider the following substitutions:
- Dairy-Free - To make these gluten-free muffins dairy-free, be sure to use oil instead of butter and a plant-based yogurt and milk. You can swap in applesauce instead of the yogurt.
- Vegan - In addition to making these muffins dairy-free, make them vegan by also swapping in a couple flax or chia eggs. Use two tablespoons of ground flaxseeds or chia seeds stirred into two tablespoons of water. Allow the mixture to set-up on the counter for 5 minutes.
- Regular Flour - You can certainly make these blackberry muffins using regular all-purpose flour if you don't care to make them gluten-free. You could even do half all-purpose and half whole-wheat flour.

Flavor Variations
These blackberry muffins have a straightforward vanilla and berry flavor. If you want something a bit different, consider these variations:
- Cinnamon and Spice - Try adding ¾ teaspoon of ground cinnamon to the dry ingredients for a warm spice flavor. You can also use ½ teaspoon of ground ginger and/or a big pinch of ground cloves or allspice.
- Lemon - Blackberries go very well with citrus, that's why you can add the zest from a lemon to the wet ingredients for a bright, lemony flavor.
- Almond - If you are a big fan of almonds, try swapping in 1 teaspoon of almond extract for the vanilla extract.
- Oats - You can add ½ cup of old-fashioned rolled oats to the batter to make a heartier blackberry muffin. You can even sprinkle the top with a big pinch of oats for some more texture.
- Streusel toping - Who doesn't love a streusel topping? I decided to keep this recipe super simple and chose not to use a fancy topping, but if you want to add one yourself, here's how to make it: Mix together ¼ cup each of gluten-free flour, rolled oats and light brown sugar. Add a dash of ground cinnamon and about 3 tablespoons of melted butter. Combine all ingredients and then sprinkle on top of your muffin batter before baking.
More Meal Prep Breakfast Recipes
We have been leaning into meal prep a lot in my household, especially for busy mornings. That's why I love these breakfast recipes that can easily be made ahead:
- Banana Oat Muffins
- Blackberry Banana Oat Muffins
- Chocolate Baked Oatmeal
- Strawberry and Almond Baked Oatmeal
- Pumpkin Pie Baked Oatmeal
- Strawberry Drop Biscuits
- Nutella Overnight Oats
- Peanut Butter Granola
- German Chocolate Baked Oatmeal
- Mini Egg Bites with Cheddar and Broccoli

Storage
Store leftover muffins in an airtight container on the counter for up to 3 days. You can also store them in the refrigerator, if desired. Note that gluten-free baked goods become denser and drier the longer they sit. You can freeze these muffins in a freezer-safe zip-top bag for up to 3 months.
Adam's Pro Tip
Leftover gluten-free muffins can be a bit dry and dense. I recommend microwaving leftover muffins (one at a time) for about 15 seconds to freshen them up a bit.
FAQ
Yes, you can absolutely make muffins gluten-fee. Simply swap in a one-to-one gluten-free flour substitute for regular all-purpose wheat flour.
All gluten-free baked goods tend to have a slightly grittier, denser texture compared to muffins made with wheat flour.
Because muffins made with a gluten-free flour substitute can't develop gluten, they won't get tough if overmixed. However, be cautious when mixing in add-ins like fruit as overmixing will break these up and make them mushy.
More breakfast recipes
Looking for more breakfast recipes like this? Try these:
Dinner recipes
Looking for some inspiration for dinner tonight? Try these recipes:
PrintRecipe
Gluten-Free Blackberry Muffins
- Total Time: 50 minutes
- Yield: 12 muffins 1x
- Diet: Gluten Free
Description
These simple Gluten-Free Blackberry Muffins are pleasantly sweet, pillowy, light and fluffy, with bursts of tart juicy blackberries in every bite. These fruity muffins are perfect for meal-prep breakfasts or any time you want a special yet easy start to your day.
Ingredients
- 2 cups plus 1 tablespoon. gluten-free flour substitute (like Bob's Red Mill Gluten Free 1 For 1 Baking Flour), divided
- ½ cup granulated sugar, plus more for dusting
- 2 tsp. baking powder
- ½ tsp. baking soda
- ½ tsp. table salt
- ½ cup Greek-strainer or regular plain yogurt
- ½ cup whole or low-fat milk
- 2 large eggs
- ⅓ cup vegetable oil or melted unsalted butter
- 1 tsp. vanilla extract
- 6 oz. blackberries
Instructions
- Preheat oven to 350F and line a muffin pan with paper muffin cups or generously spray with cooking spray. Place the oven rack in the middle position.
- Whisk together 2 cups gluten-free flour, sugar, baking powder, baking soda and table salt in a large mixing bowl until well combined. In a separate medium mixing bowl, whisk together the yogurt, milk, eggs, oil (or butter) and vanilla until smooth. Note that the mixture may look curdled at the beginning, but continue to whisk and it'll become smooth.
- Make a well in the center of the dry ingredients and pour in the wet ingredients. Whisk a bit then switch to a spatula and stir to combine until well incorporated.
- Cut any large blackberries in half. Toss and coat berries with remaining 1 tablespoon gluten-free flour. Add the berries into the batter and fold to combine. Divide batter among muffin cups, about ⅓ cup in each cup. Sprinkle the top with a large pinch of sugar. Bake in the oven until set and a toothpick inserted into the center comes out clean, 22 to 25 minutes. Cool on a wire rack for 5 minutes then remove the muffins from the pan and cool at least 10 minutes on a wire rack.
Notes
- Store leftovers in an airtight container at room temperature or the refrigerator for up to 3 days.
- Consider reheating leftover muffins in a microwave for 15 seconds as gluten-free baked goods tend to get dry and dense the longer they sit out.
- You can use frozen blackberries, but thaw them first and drain off as much excess liquid as possible.
- Consider adding ¾ teaspoon of ground cinnamon or ground ginger, or a big pinch of ground clove or allspice. Or add the zest of a lemon. You can swap in almond extract for the vanilla, if desired.
- You can add ½ cup of rolled oats to the batter for a heartier muffin.
- Prep Time: 10 minutes
- Cook Time: 22 minutes
- Category: Breakfast
- Method: Baking
- Cuisine: American


Nanajee Travels says
These sound absolutely delightful! 😍🧁 The combination of sweet, fluffy muffins with juicy blackberries is irresistible. Perfect for a grab-and-go breakfast or a cozy treat with coffee! ☕✨ Can’t wait to try them! 🙌